This page contains resources I have developed for various research topics I have been involved in. These tutorials have been developed throughout my own learning process and are designed to help you through your own research endeavors. Please feel free to reach out to me with any questions about any of the discussed topics for more information.
RNA Sequencing
Reference Based RNA Sequencing Analysis - Galaxy Tutorial
- This tutorial goes over the full RNA sequencing pipeline in Galaxy, an open source web-based platform for data intensive biomedical research. Galaxy is great for conducting RNA-seq analysis when you don’t have access to the appropriate computing resources.
From Gene Counts to Differential Expression - DESeq2 Tutorial
- This tutorial is a continuation of the Galaxy tutorial where we go from gene counts to differential expression using DESeq2. We even go through plotting and analysis!
Machine Learning
PyTorch Tutorial Using FashionMNIST
- This tutorial walks through building a neural network using PyTorch using the FashionMNIST dataset. By the end of this tutorial, you should be able to have a neural network that predicts the clothing item given an image.
Miscellaneous Tutorials
- Just some common tips and tricks for Markdown files!